rs33901083 SNP Detail

Summary

• ID
  rs33901083
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156287020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGGAAAA AAAATTTGGT
  GTGTGTGTGT GTGTGTTTTG AGACAGGGTC TCACTATGTA ACCCTGGCTG TGCTGGGACT
  TACTCTGTAG ACCAGGCAGG CCTCGAACTC ACGGAGCTCT TTCTGTCTCT GCCTCTTGAA
  TGCTACATTA AAGGCACGTG CGGCTGTGCC TCACTTGCCC TAAGTTTTTG AGTTCTTCTT
  K
  GCTGAACTTA GCGGTGGGGT AATTCAGGAT ACATCACTGG CACCATGACA TCATCCCATC
  TGGTTTCTGT CACCACTGAT ATCCTTATCC TTACACTGCA CGAAGTCGTC CTTCCGCTGC
  CCTGTGATAT CAGTTGATGT CACTTATCAG GTGACCAGGA CCAGTTGACC CCTCTCTAGT
  CTCGGTGTCT GGTGTTGGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46789434	NES10982879	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33901083					SNP	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789434	NES10982879	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156287020 () rs orientation: forward

Symbol	Name	Function Class
AW011738	expressed sequence AW011738	721 bp upstream
Cpgi15503	CpG island 15503	220 bp proximal
Isg15	ISG15 ubiquitin-like modifier	1767 bp upstream
Rr398932	regulatory region 398932	436 bp upstream
Rr606695	regulatory region 606695	1778 bp distal
Rr606696	regulatory region 606696	1493 bp distal
Rr606697	regulatory region 606697	126 bp proximal
Rr606698	regulatory region 606698	146 bp proximal
Rr606699	regulatory region 606699	752 bp proximal
Rr606700	regulatory region 606700	1220 bp proximal
Tssr40795	transcription start site region 40795	729 bp upstream
Tssr45019	transcription start site region 45019	1758 bp upstream
Tssr45020	transcription start site region 45020	1730 bp upstream
Tssr45021	transcription start site region 45021	1717 bp upstream