rs33757839 SNP Detail

Summary

• ID
  rs33757839
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:23250515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTTCAG GTACCCAGGC
  ACTTCTAGCT GGGCAGACCT GAGAGGCAGA GAAGAGTAGG AGTCTGGGCA GGGCACCCTG
  GCAGAGAAAA GGAGGCAACA CAAAAATCCG GAGGCATTCT GGAATCCTTT GGGGCCTCAG
  TTTTTCCCCA ACTGGAAATG TTCGTTCGAT TTGCTTTTGG GGCCGCAGAA CCTTGGTCCT
  W
  CACCCTGATC AGACAAAGGG TGCGGGTGAC CTGGACTGCT TAAGGAAAGG CGGGGTCGGG
  AGTGTCCCTG TCCCAAGACA GATGGGTAGA GGTTAAGACT TTAATTGCTG CCTTTTGGGG
  CGGATCAGAT TCCCTTTCCT ACCTGCTTTC TTAACAGCGG AAAAAAAAAA AATCTCCCTC
  CTGCTGCACT CCTCCCTCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47838090	NES11695117	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33757839					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47838090	NES11695117	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23250515 () rs orientation: forward

Symbol	Name	Function Class
C130093G08Rik	RIKEN cDNA C130093G08 gene	617 bp upstream
Cpgi17197	CpG island 17197	344 bp distal
Gm56925	predicted gene, 56925	within coordinates
Rr627164	regulatory region 627164	1968 bp distal
Rr627165	regulatory region 627165	845 bp distal
Rr627166	regulatory region 627166	within coordinates
Rr627167	regulatory region 627167	742 bp distal
Rr627168	regulatory region 627168	770 bp proximal
Rr627169	regulatory region 627169	1573 bp proximal
Tssr55159	transcription start site region 55159	1968 bp downstream
Tssr55160	transcription start site region 55160	1888 bp downstream
Tssr55161	transcription start site region 55161	1738 bp downstream
Tssr55162	transcription start site region 55162	1679 bp downstream
Tssr55163	transcription start site region 55163	642 bp upstream