rs33757837 SNP Detail

Summary

• ID
  rs33757837
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:23250385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGCTGGG AAAAATAAAA
  TAAAACAGGG GCCAACAGAA GTCTTTTTGA AAGTTGCAGC GGCTAAGAAG CCAGATGGTG
  GAAAAGTCTG GCTGTTTGTG GCCCGCCTTG GTGGCTAGGC CTGGGAGTGT CTTCTTTCAG
  GTACCCAGGC ACTTCTAGCT GGGCAGACCT GAGAGGCAGA GAAGAGTAGG AGTCTGGGCA
  R
  GGCACCCTGG CAGAGAAAAG GAGGCAACAC AAAAATCCGG AGGCATTCTG GAATCCTTTG
  GGGCCTCAGT TTTTCCCCAA CTGGAAATGT TCGTTCGATT TGCTTTTGGG GCCGCAGAAC
  CTTGGTCCTT CACCCTGATC AGACAAAGGG TGCGGGTGAC CTGGACTGCT TAAGGAAAGG
  CGGGGTCGGG AGTGTCCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47838088	NES11695116	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33757837					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47838088	NES11695116	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23250385 () rs orientation: forward

Symbol	Name	Function Class
C130093G08Rik	RIKEN cDNA C130093G08 gene	747 bp upstream
Cpgi17197	CpG island 17197	214 bp distal
Gm56925	predicted gene, 56925	within coordinates
Rr627164	regulatory region 627164	1838 bp distal
Rr627165	regulatory region 627165	715 bp distal
Rr627166	regulatory region 627166	within coordinates
Rr627167	regulatory region 627167	612 bp distal
Rr627168	regulatory region 627168	900 bp proximal
Rr627169	regulatory region 627169	1703 bp proximal
Tssr55159	transcription start site region 55159	1838 bp downstream
Tssr55160	transcription start site region 55160	1758 bp downstream
Tssr55161	transcription start site region 55161	1608 bp downstream
Tssr55162	transcription start site region 55162	1549 bp downstream
Tssr55163	transcription start site region 55163	772 bp upstream
Tssr59962	transcription start site region 59962	1996 bp upstream