rs33756971 SNP Detail

Summary

• ID
  rs33756971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:23249547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATCAGTG CACGCGATAC
  CCCGCGTGTC TGTGCGCGCA GACGAACAAA GTGTGGTGGT CACGGACCAT TTCTGCCCCC
  CCCCCCCGAG CGTTTGGAGA CCCTAAGCGT CCCCTACCCC CCCCCACCCT CCCCCGCGCG
  CCCAGCGCCC TCCTGGTGTG ACGCCTGGGG CCCAAATTCG CTAGCTGGGC GAGCTTTCCA
  Y
  GAAAAGGCCG GACGCTGAGG CTCCCATTGC GCGGGTCCCC GCGGCTCCCG CCCGAGTAGC
  GGCGCGCGCC TTCCCCGGAG AGGTCAACCG GGAGCCTTCG GTCGCCGAGA GCAGAACCCC
  AGGCACGCTC CTGGGGCTGC GGACCGTAGA CAAACCCCCG CCGTTCTCAA GCCAGTTCCC
  GGAGGAAGCT GAGCGATGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47838082	NES11695113	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33756971					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47838082	NES11695113	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23249547 () rs orientation: forward

Symbol	Name	Function Class
C130093G08Rik	RIKEN cDNA C130093G08 gene	1585 bp upstream
Cpgi17197	CpG island 17197	within coordinates
Fezf1	Fez family zinc finger 1	Intron
Gm56925	predicted gene, 56925	within coordinates
Rr627164	regulatory region 627164	1000 bp distal
Rr627165	regulatory region 627165	within coordinates
Rr627166	regulatory region 627166	124 bp proximal
Rr627167	regulatory region 627167	205 bp proximal
Rr627168	regulatory region 627168	1738 bp proximal
Tssr55159	transcription start site region 55159	1000 bp downstream
Tssr55160	transcription start site region 55160	920 bp downstream
Tssr55161	transcription start site region 55161	770 bp downstream
Tssr55162	transcription start site region 55162	711 bp downstream
Tssr55163	transcription start site region 55163	1610 bp upstream
Tssr59962	transcription start site region 59962	1158 bp upstream