rs33713190 SNP Detail

Summary

• ID
  rs33713190
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146679960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCCAAGG ACCAAAGCAG
  CTTCCAGGCC CTTCACCTTC CAGGCCCCTT CACTTCCCCA CCCTTCACAA TTTTCCCTTC
  TACCAACCAC CTCCTCCCCC TTCAGAATTT TTTTCTCCCT GGAGGAAGAA TATCCTGAAA
  TTCTTGTGAG TTTACATCTG TTAACTTGGA GTCATTTCAG GCCAAACCTC TGTGTATAGG
  R
  TTTGTTTCTG CTCTAGATGG GTAGGTTTCT TTTCATTTTC TTTGGGCATA TATAATGTGT
  CATATATACA TTTGCATGCA CAATAAGATA CATACATATA CATACGTGCT TATGGCACAT
  TTTTCTATAT CACGGCATAT TTACAGGTAT ACTTAGTTAT TAGTGGTTTT CTTCCCTCCA
  CTATTTGAAA ATAGTGGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45312319	mCV23999457	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss147873670	ENSMUSSNP6111757	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
ss320546137	CHEV_2_146663776	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33713190					SNP	G	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146679960 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12370	CpG island 12370	1494 bp distal
Cpgi12371	CpG island 12371	880 bp distal
Cpgi12372	CpG island 12372	1328 bp proximal
Gm14114	predicted gene 14114	within coordinates
Gm34978	predicted gene, 34978	272 bp upstream
Gm57437	predicted gene, 57437	460 bp downstream
Rr566735	regulatory region 566735	182 bp proximal
Rr566736	regulatory region 566736	756 bp proximal
Rr566737	regulatory region 566737	1491 bp proximal
Tssr20612	transcription start site region 20612	948 bp upstream