Gm34978 Gene Detail

Summary

• Symbol
  Gm34978
• Name
  predicted gene, 34978

• Feature Type
  lncRNA gene
• IDs
  MGI:5594137
  NCBI Gene: 102638401
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:146680232-146682346 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594137	lncRNA gene	Chr2:146675768-146682346 (+)
129S1/SvImJ	ENSMUSG00200031023	lncRNA gene	Chr2:143793553-143794736 (+)
A/J	ENSMUSG00195022984	lncRNA gene	Chr2:143925309-143926490 (+)
AKR/J	ENSMUSG00220045931	lncRNA gene	Chr2:143502350-143503533 (+)
BALB/cJ	ENSMUSG00180045799	lncRNA gene	Chr2:143586961-143588142 (+)
C3H/HeJ	ENSMUSG00175047019	lncRNA gene	Chr2:144133953-144135134 (+)
C57BL/6NJ	ENSMUSG00215037088	lncRNA gene	Chr2:143643244-143644427 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043459	lncRNA gene	Chr2:142792744-142793927 (+)
CBA/J	ENSMUSG00210045866	lncRNA gene	Chr2:144053153-144054334 (+)
DBA/2J	ENSMUSG00185049354	lncRNA gene	Chr2:143672112-143673295 (+)
FVB/NJ	ENSMUSG00205040034	lncRNA gene	Chr2:142864823-142866005 (+)
JF1/MsJ	ENSUMUG00000046096	lncRNA gene	Chr2:143461876-143463059 (+)
LP/J	ENSMUSG00230036202	lncRNA gene	Chr2:145375970-145377153 (+)
NOD/ShiLtJ	ENSMUSG00190044913	lncRNA gene	Chr2:143731720-143732899 (+)
NZO/HlLtJ	ENSMUSG00225005969	lncRNA gene	Chr2:153364439-153365622 (+)
PWK/PhJ	ENSLUMG00010047126	lncRNA gene	Chr2:143492809-143493992 (+)
SPRET/EiJ	ENSMSPG00010030676	lncRNA gene	Chr2:145968928-145970101 (+)
WSB/EiJ	ENSIUOG00005047313	lncRNA gene	Chr2:143500188-143501367 (+)

Homology

• Gene Tree
  Gm34978
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm34978
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  48
• RefSeq
  4

• Ensembl
  ENSMUSG00000120392 (Evidence)
• NCBI Gene
  102638401

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120392	Ensembl Gene Model | MGI Sequence Detail	2115	C57BL/6J
transcript	ENSMUST00000243002	Ensembl | MGI Sequence Detail	1920	Not Applicable

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm34978:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr20612	Chr2:146680908-146680921 (+)	683 bp