rs33706519 SNP Detail

Summary

• ID
  rs33706519
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93812132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCT TTCTATTTTT TAATACACTT
  R
  TTTGTAACAT GGCAAGGAAG ACAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45311440	mCV25044824	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss146950284	ENSMUSSNP1269774	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33706519					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93812132 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alkbh3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase			Intron
				Noncoding-Transcript-Variant
Alkbh3os1	alkB homolog 3, opposite strand 1			within coordinates
Gm27027	predicted gene, 27027			Intron
Rr561321	regulatory region 561321			1773 bp distal
Rr561322	regulatory region 561322			1663 bp distal
Rr561323	regulatory region 561323			407 bp proximal