rs33329802 SNP Detail

Summary

• ID
  rs33329802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146680867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACTGCAA AGGCCGCTAG
  CCACCTGCCT CGCCGGAGGC AGAACTGTGT AGCTACAGCC TCTGCGGAGC GTCCAGCCTC
  CGCGCTTTTA CTCTGCGCGG CCCTGAGCTC TCTTCTTGGG AGGTAAGAGG TGGTCACACC
  CGAATCTCAG CTGAACCCCT TTTAAAATGC AAAGGAACCC GTTTCCTCAC GGTTCTGGTT
  Y
  CGTTCCCCCA AACAACTAGG AAACCCCTAG TTTTGCTGAG GCTTCTGCAG TTCCAGCACA
  TCGGTTTGAT GGGGCGGCTG CACACACCTT CCAGGTTGAA CCCTGGGCTG GCGTGAACAC
  AGGTCAGCCC AAGATTGGGC CAGGAACTGC GGCCTCTGGA AGAGTGGCTT CGGGTGGTCC
  TACCCGACGG TCACCAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45265214	mCV23999480	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147873697	ENSMUSSNP545112	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320546142	CHEV_2_146664683	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33329802					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146680867 () rs orientation: forward

Symbol	Name	Function Class
Gm14114	predicted gene 14114	within coordinates
Gm34978	predicted gene, 34978	within coordinates
Gm57437	predicted gene, 57437	1367 bp downstream
Rr566735	regulatory region 566735	152 bp distal
Rr566736	regulatory region 566736	within coordinates
Rr566737	regulatory region 566737	584 bp proximal
Tssr20612	transcription start site region 20612	41 bp upstream