rs33151776 SNP Detail

Summary

• ID
  rs33151776
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95791523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACTGTAG CTGTCTTCAG
  ACACTCCAGA AGAGGGCATG AGATCCCATT ACAGATGGTT GTGAGCCACC ATGTGGTTGC
  TGGGAATTGA ACTCAGGACC TCTTGAAGAG CAGTCAGTGC TCTTAACCGC TGAACCATCT
  CTCCAGTCCC AATTTTTTTT TAAAATTTTT CATCCAAATT CTTGCCAAAG AATTCTAGTC
  Y
  GAAGAGTGAT AGCGGCCTTC TCTCACCTGG GAAAGGGGGT GGATAGAAAC AGGGTCAGGG
  GGGCTGGCCC AGTGTTTAAG AGAACACACT TTCGCAGAGG ACCTAAGTTC CAGTCCCAGC
  ACTCATGTCA GCTGGCTCAC AAACCCCTGT AAACTCTCCC CCCAGAAACT CTGGTGCTTG
  TAGCCTGAGC GCCCATACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46777808	NES10737337	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33151776					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777808	NES10737337	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95791523 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BC028528	cDNA sequence BC028528			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
C920021L13Rik	RIKEN cDNA C920021L13 gene			within coordinates
Ciart	circadian associated repressor of transcription			1960 bp upstream
Cpgi13525	CpG island 13525			1217 bp distal
Rr581070	regulatory region 581070			1437 bp distal
Rr581071	regulatory region 581071			801 bp distal
Rr581072	regulatory region 581072			947 bp distal
Rr581073	regulatory region 581073			26 bp proximal
Tssr30650	transcription start site region 30650			1636 bp downstream
Tssr30651	transcription start site region 30651			1471 bp downstream
Tssr30652	transcription start site region 30652			1434 bp downstream
Tssr34555	transcription start site region 34555			1980 bp upstream
Tssr34556	transcription start site region 34556			1967 bp upstream