C920021L13Rik Gene Detail

Summary

• Symbol
  C920021L13Rik
• Name
  RIKEN cDNA C920021L13 gene
• Synonyms
  100042889

• Feature Type
  lncRNA gene
• IDs
  MGI:1923991
  NCBI Gene: 100042889
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr3:95778834-95796405 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 41.39 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  394 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923991	lncRNA gene	Chr3:95778493-95796405 (+)
129S1/SvImJ	ENSMUSG00200044573	lncRNA gene	Chr3:92437834-92455411 (+)
A/J	ENSMUSG00195048345	lncRNA gene	Chr3:92762090-92779682 (+)
AKR/J	ENSMUSG00220041877	lncRNA gene	Chr3:91149150-91166734 (+)
BALB/cJ	ENSMUSG00180044085	lncRNA gene	Chr3:92761512-92779102 (+)
C3H/HeJ	ENSMUSG00175030302	lncRNA gene	Chr3:92405742-92423333 (+)
C57BL/6NJ	ENSMUSG00215036266	lncRNA gene	Chr3:93124613-93142199 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003404	antisense lncRNA gene	Chr3:89951862-89970364 (+)
CAST/EiJ	ENSTCUG00005048311	lncRNA gene	Chr3:92957982-92975562 (+)
CBA/J	ENSMUSG00210051641	lncRNA gene	Chr3:92943213-92960806 (+)
DBA/2J	ENSMUSG00185044430	lncRNA gene	Chr3:93360309-93377891 (+)
FVB/NJ	ENSMUSG00205050903	lncRNA gene	Chr3:92056539-92074126 (+)
JF1/MsJ	ENSUMUG00000047720	lncRNA gene	Chr3:92252804-92270281 (+)
LP/J	ENSMUSG00230045285	lncRNA gene	Chr3:95301243-95318822 (+)
NOD/ShiLtJ	ENSMUSG00190048510	lncRNA gene	Chr3:93468300-93485921 (+)
NZO/HlLtJ	ENSMUSG00225012430	lncRNA gene	Chr3:97723231-97740819 (+)
PWK/PhJ	ENSLUMG00010052376	lncRNA gene	Chr3:92232604-92249993 (+)
SPRET/EiJ	ENSMSPG00010046261	lncRNA gene	Chr3:92535676-92553215 (+)
WSB/EiJ	ENSIUOG00005031695	lncRNA gene	Chr3:92881598-92898766 (+)

Homology

• Gene Tree
  C920021L13Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  13
• Chemically induced (other)
  1
• Gene trapped
  11
• Radiation induced
  1
• Genomic Mutations
  2 involving C920021L13Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  606
• Tissues
  8
• cDNA Data
  5
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  1

• Ensembl
  ENSMUSG00000080727 (Evidence)
• NCBI Gene
  100042889

Representative Sequences			Length	Strain/Species
genomic	100042889	NCBI Gene Model | MGI Sequence Detail	17572	C57BL/6J
transcript	NR_040446	RefSeq | MGI Sequence Detail	1726	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 5

  Primer pair 1

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:3782266

References

• Summaries
  All 19

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for C920021L13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30647	Chr3:95778831-95778892 (+)	28 bp
Tssr30648	Chr3:95778897-95778947 (+)	88 bp
Tssr30649	Chr3:95784365-95784371 (+)	5,534 bp
Tssr30650	Chr3:95789882-95789887 (+)	11,051 bp
Tssr30651	Chr3:95790039-95790052 (+)	11,212 bp
Tssr30652	Chr3:95790065-95790089 (+)	11,243 bp