rs33150950 SNP Detail

Summary

• ID
  rs33150950
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95790542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGGAACA GAGCAGAGTA
  GATCTTTGCT CCTCAAGCTT ATGGCTTTAT CTGGCTTCAG TTTATTTGTT CCTGGGAGAA
  AACTGGGGAA ACGTTGAGGA AGGAAAAAAG CGAGTCAAGA GTTTAGAGAG TCACCAACAG
  ACCTTAGCAT CCCTTGCACC AAGTCACTGT AAAAGGAAAC GATGGCGAGG AGGACCCTGT
  M
  GACTGAAGCA GAGGAGTCGC AAGGGGGCAC TCTAGTTCTG ATTAGGGTCG AGAGAACAGA
  CACTACCACC CCCCCACCCC CCCAGTCTTA CTAAAAGAAA AGTTGGACAG GGATCTAAGT
  CATGGTTTGG AGAACGTGTG GTTATTTTAA ATATGTTCTA ATGCTTTTTT ACTTATATTT
  AGCAATGTGG TTATTTTAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46777802	NES10737467	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	C	A	C	C	C	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33150950					SNP	C	C	C	A	C	C	A	C	C	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777802	NES10737467	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95790542 () rs orientation: forward

Symbol	Name	Function Class
BC028528	cDNA sequence BC028528	Intron
C920021L13Rik	RIKEN cDNA C920021L13 gene	within coordinates
Ciart	circadian associated repressor of transcription	979 bp upstream
Cpgi13525	CpG island 13525	236 bp distal
Rr581069	regulatory region 581069	1036 bp distal
Rr581070	regulatory region 581070	456 bp distal
Rr581071	regulatory region 581071	within coordinates
Rr581072	regulatory region 581072	13 bp proximal
Rr581073	regulatory region 581073	1007 bp proximal
Tssr30650	transcription start site region 30650	655 bp downstream
Tssr30651	transcription start site region 30651	490 bp downstream
Tssr30652	transcription start site region 30652	453 bp downstream
Tssr34553	transcription start site region 34553	1183 bp upstream
Tssr34554	transcription start site region 34554	1040 bp upstream
Tssr34555	transcription start site region 34555	999 bp upstream
Tssr34556	transcription start site region 34556	986 bp upstream