rs32916473 SNP Detail

Summary

• ID
  rs32916473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135582674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTGTGTA TGGGTGCCCT
  AGGAGGCCAA AGAGGGAACT AGTAACAAAG CACTGAGCCC GCTCCCTCAA CGTGGGGAAT
  AGAGGGGAGG AGGCGCTAGA GAGAGGGAGG GGAGGGAGAA GAGAGGAGAA AAAAGGAGAG
  GGAGAAAAGC AAACCAGCTA GCCAAGGTTT TTTTGTAGCT GGGGAGTCCC ATGATGAGGA
  Y
  TGAAAGTTGG AGGGGGACTG GAGCAAGAGG GGGACGATGG GCCGGGGTGA GTGGGCAGTG
  TCTGTCTTAG GGTGCAGGCA GGTCTGTGGG AAGAAACTTG GCTAGCAAAT CCAAGGACCT
  AGATTGGATC CCCAGAAAAC AACAAAGAGA CAAACACCAC CTCTTCAAGG CTGGAAAAGG
  GGTTCAGGCA CCTTGCATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45712322	mCV24798508	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147552107	ENSMUSSNP6396407	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss321353316	CHEV_4_135411278	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32916473					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135582674 () rs orientation: forward

Symbol	Name	Function Class
Gm13000	predicted gene 13000	1190 bp downstream
Gm57106	predicted gene, 57106	within coordinates
Gm69173	predicted gene, 69173	within coordinates
Rr367748	regulatory region 367748	214 bp upstream
Rr398596	regulatory region 398596	462 bp upstream
Rr602159	regulatory region 602159	1120 bp distal
Rr602160	regulatory region 602160	187 bp distal
Rr602161	regulatory region 602161	within coordinates
Rr602162	regulatory region 602162	395 bp proximal
Rr602163	regulatory region 602163	550 bp proximal
Srsf10	serine and arginine-rich splicing factor 10	mRNA-UTR
Tssr39638	transcription start site region 39638	344 bp upstream
Tssr39639	transcription start site region 39639	724 bp upstream
Tssr39640	transcription start site region 39640	765 bp upstream
Tssr39641	transcription start site region 39641	879 bp upstream
Tssr39642	transcription start site region 39642	1273 bp upstream
Tssr43999	transcription start site region 43999	506 bp downstream