rs32868089 SNP Detail

Summary

• ID
  rs32868089
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146679033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTCAAA TAACAGTGTC
  TGTGAGGAGA AGTGAATCCT CTGAAAGGGT AATTGTCTGC TGATGGTGTT TCCCATTATA
  CCCGATCTTG GCCTAAATGA TGCTGGGCGG CAGGGCGGAG AGTGAGGGGT GAAATCAAAG
  CACGCAACTC GGGCTCCGGA GGAAGAAAAG GTCCCTCTAG ATCGCTTACC CACAAGTCTA
  R
  CGCACAATGC GGCCGATTGC ATCACCGATT TGGATGCTAT TCTGCAGATC TCCGACATCA
  TCAAACTGAA GTGATCTTGG GAATAAGAGA ATAAAACTGA CTCTCTTTTC GAAACTTTAG
  GAATCCTTAG TATCTTGGCC GCATTGTTGA GCCAACAGAT AACCAAGATA GTAAAACCCA
  GTTTGGCCAT GCTCCCACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45205354	mCV23999445	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss320546130	CHEV_2_146662849	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32868089					SNP	G	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146679033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12369	CpG island 12369	1729 bp distal
Cpgi12370	CpG island 12370	567 bp distal
Cpgi12371	CpG island 12371	within coordinates
Gm14114	predicted gene 14114	within coordinates
Gm34978	predicted gene, 34978	1199 bp upstream
Gm57437	predicted gene, 57437	within coordinates
Rr566734	regulatory region 566734	1737 bp distal
Rr566735	regulatory region 566735	1109 bp proximal
Rr566736	regulatory region 566736	1683 bp proximal
Tssr20612	transcription start site region 20612	1875 bp upstream