rs32842391 SNP Detail

Summary

• ID
  rs32842391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146681048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTCACG GTTCTGGTTC
  CGTTCCCCCA AACAACTAGG AAACCCCTAG TTTTGCTGAG GCTTCTGCAG TTCCAGCACA
  TCGGTTTGAT GGGGCGGCTG CACACACCTT CCAGGTTGAA CCCTGGGCTG GCGTGAACAC
  AGGTCAGCCC AAGATTGGGC CAGGAACTGC GGCCTCTGGA AGAGTGGCTT CGGGTGGTCC
  Y
  ACCCGACGGT CACCAGGTGA GTATAGGAAA AGCCATTCAA GGTCAAGATG AGTGGGGGCG
  GGGGCCGGGT GGAGACGCAC AAACTCCAAG CCCCCCGGTT CCTTCTTTCC AAGGGCGTTT
  TTAGCCTCAG AAACATCCTA GACTGCGGCA GAGGGAAGGA GATTTAAGAT CTGACAGTTC
  CCTGCCTGCG ACTGTTTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45202054	mCV23999481	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss147873700	ENSMUSSNP5574816	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss320546143	CHEV_2_146664864	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32842391					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146681048 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12371	CpG island 12371	1968 bp distal
Cpgi12372	CpG island 12372	240 bp proximal
Gm14114	predicted gene 14114	within coordinates
Gm34978	predicted gene, 34978	within coordinates
Gm57437	predicted gene, 57437	1548 bp downstream
Rr566735	regulatory region 566735	333 bp distal
Rr566736	regulatory region 566736	within coordinates
Rr566737	regulatory region 566737	403 bp proximal
Tssr20612	transcription start site region 20612	127 bp downstream