rs32758228 SNP Detail

Summary

• ID
  rs32758228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135581438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGCTCCT TTGGACAGAG
  AAACTACAGT GTCGTGGCCT TGGAGGTCAC TTATGGATGG TACGTAGACC ATAGAAGGGG
  GTAAAGCAAA AATTGCCTGG AATATTCCTA TTTCTCTGCA GGATGTAATG GGTGGAGAAG
  TAGGCGGAAC AGATCATCTT CACACAGCAG GAGAGAGAGA TGATTGACAG GCACACTGTA
  Y
  ACCCAAGCTG CTCACAGAGA AGGCTCCAGT GCAACATGTT ATGTAAATAC ACCTATCTCA
  ATGGTGACAG CCAGAAGCAG TTGGCTGATG GGAGCTCATC TACGTGGTTG AATCTTCCTG
  GGTTGCTACT GAAATTACAG TGCCTTTCTT AAGAAATGTT CATTTATTGG GTTACATCGA
  TCTGCCAGCC AGTCGGGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45691193	mCV24798532	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss147552063	ENSMUSSNP5384666	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs32758228					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135581438 () rs orientation: forward

Symbol	Name	Function Class
Gm13000	predicted gene 13000	within coordinates
Gm57106	predicted gene, 57106	1007 bp downstream
Gm69173	predicted gene, 69173	within coordinates
Rr367748	regulatory region 367748	1450 bp upstream
Rr398596	regulatory region 398596	1698 bp upstream
Rr602158	regulatory region 602158	1339 bp distal
Rr602159	regulatory region 602159	within coordinates
Rr602160	regulatory region 602160	1028 bp proximal
Rr602161	regulatory region 602161	1130 bp proximal
Rr602162	regulatory region 602162	1631 bp proximal
Rr602163	regulatory region 602163	1786 bp proximal
Srsf10	serine and arginine-rich splicing factor 10	1620 bp upstream
Tssr39638	transcription start site region 39638	1580 bp upstream
Tssr39639	transcription start site region 39639	1960 bp upstream
Tssr43999	transcription start site region 43999	1742 bp downstream