rs32731377 SNP Detail

Summary

• ID
  rs32731377
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135582860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCATGATG AGGACTGAAA
  GTTGGAGGGG GACTGGAGCA AGAGGGGGAC GATGGGCCGG GGTGAGTGGG CAGTGTCTGT
  CTTAGGGTGC AGGCAGGTCT GTGGGAAGAA ACTTGGCTAG CAAATCCAAG GACCTAGATT
  GGATCCCCAG AAAACAACAA AGAGACAAAC ACCACCTCTT CAAGGCTGGA AAAGGGGTTC
  R
  GGCACCTTGC ATGTGAGCAA CAGAGACAAG GACAGCAGGG CCCGGGTCTC ACGGGGAGGG
  AATTGCGTGC CTAGGTGACG CGGATGTGCA GCAAAGGCAG AGAGTTGCAC GCACGGCACG
  CCGAAAGCTC TGCCCCTCCC CCAAACCCCA CAAAGAATCT CTAAGTTCCT CTCTCTGGCC
  AGAGATCTGA TAAGAAGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45686242	mCV24798507	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss147552113	ENSMUSSNP4420070	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32731377					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135582860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15082	CpG island 15082	within coordinates
Gm13000	predicted gene 13000	1376 bp downstream
Gm57106	predicted gene, 57106	within coordinates
Gm69173	predicted gene, 69173	within coordinates
Rr367748	regulatory region 367748	28 bp upstream
Rr398596	regulatory region 398596	276 bp upstream
Rr602159	regulatory region 602159	1306 bp distal
Rr602160	regulatory region 602160	373 bp distal
Rr602161	regulatory region 602161	within coordinates
Rr602162	regulatory region 602162	209 bp proximal
Rr602163	regulatory region 602163	364 bp proximal
Srsf10	serine and arginine-rich splicing factor 10	mRNA-UTR
Tssr39638	transcription start site region 39638	158 bp upstream
Tssr39639	transcription start site region 39639	538 bp upstream
Tssr39640	transcription start site region 39640	579 bp upstream
Tssr39641	transcription start site region 39641	693 bp upstream
Tssr39642	transcription start site region 39642	1087 bp upstream
Tssr43999	transcription start site region 43999	320 bp downstream