rs32434076 SNP Detail

Summary

• ID
  rs32434076
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:75454536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAGCTCCG TGCTGATATA CCGAGTTCTG GGAAAAGACA
  GTTAGGAACA AGATAGCACA CAGCTTCACT TGTTAGTTCT CCTCTGGACC TGTTTGGCAC
  Y
  CACGAACGGG AGGATAAGAC TGTCTCTCCC ACGAGACATG ATTTAAGTGA TATACTGGTC
  TCACAGAAAG TGTTGCATCT AGGAGACAGC ACTTCCAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45147221	mCV25162855	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss144695192	ENSMUSSNP6660002	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs32434076					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75454536 () rs orientation: forward

Symbol	Name	Function Class
Chpf	chondroitin polymerizing factor	Intron
Rr413448	regulatory region 413448	532 bp distal
Rr413449	regulatory region 413449	298 bp distal
Rr413450	regulatory region 413450	138 bp proximal
Rr413451	regulatory region 413451	804 bp proximal
Rr413452	regulatory region 413452	1369 bp proximal
Rr413453	regulatory region 413453	1799 bp proximal
Tmem198	transmembrane protein 198	1640 bp upstream
Tssr7538	transcription start site region 7538	1614 bp upstream
Tssr7539	transcription start site region 7539	1637 bp upstream
Tssr12402	transcription start site region 12402	1211 bp downstream
Tssr12403	transcription start site region 12403	1233 bp downstream
Tssr12404	transcription start site region 12404	1256 bp downstream
Tssr12405	transcription start site region 12405	1269 bp downstream
Tssr12406	transcription start site region 12406	1392 bp downstream
Tssr12407	transcription start site region 12407	1497 bp downstream