rs32363553 SNP Detail

Summary

• ID
  rs32363553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135582223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACCACTC CTTTGGCAGA
  GCTGCTGTTT GGTAAATTGC ACAACGTGCC CAAAAGCCTG GTGGTCAAGG GGTGTTGGAC
  TTCTTGCTTT TCTTCTTGGT CATACTCTCA TTCTCTCCGC AGTCCTCATG TTTACCAGAG
  ACTGTGTGAT GTATGTGAGG GAAGTGATGT GTGCATCTTC TCACTCATAA GTTTGAACTC
  Y
  GTAGATATTA ACGCATATAA GCCATATTTA AAAACAGGGC GCTGGGCAGT GGTGGCGCAC
  GCCTTTGATC CCAGCACTTG GGAGGCACAG GCAGGTGGAT TTCTGAGTTC GAGGCCAGCC
  TGGTCTACAA AGTGAGTTCC AGGACAGCCA GGGCTGTACA GAGAAACCCT GTCTCGAAAA
  GCAAGCAAAC AAACAAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss45638829	mCV24798516	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss147552102	ENSMUSSNP1484144	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs32363553					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135582223 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15082	CpG island 15082	522 bp proximal
Gm13000	predicted gene 13000	739 bp downstream
Gm57106	predicted gene, 57106	222 bp downstream
Gm69173	predicted gene, 69173	within coordinates
Rr367748	regulatory region 367748	665 bp upstream
Rr398596	regulatory region 398596	913 bp upstream
Rr602159	regulatory region 602159	669 bp distal
Rr602160	regulatory region 602160	243 bp proximal
Rr602161	regulatory region 602161	345 bp proximal
Rr602162	regulatory region 602162	846 bp proximal
Rr602163	regulatory region 602163	1001 bp proximal
Srsf10	serine and arginine-rich splicing factor 10	835 bp upstream
Tssr39638	transcription start site region 39638	795 bp upstream
Tssr39639	transcription start site region 39639	1175 bp upstream
Tssr39640	transcription start site region 39640	1216 bp upstream
Tssr39641	transcription start site region 39641	1330 bp upstream
Tssr39642	transcription start site region 39642	1724 bp upstream
Tssr43999	transcription start site region 43999	957 bp downstream