rs32265177 SNP Detail

Summary

• ID
  rs32265177
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135583886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCGAAGA TGGCGGGGCC
  CGCGCCGGCT CTAGGCCGCG CCGCCGGCCT GCAGGAGCAA GGGCGGACAC CGGGCCGAGC
  GCTGGCGAGC GAGCAGGCGT GAGGGCCGCG TGGCGGGCAT TCGGGGGCCC CGTCCTCCCC
  CGCGTGCTCG GCGGCTGGGC CGAGCCGGCG GGCCGGACGT GTGTGTCCCT CATGGATCCG
  R
  CGTCCACGTT CCATGAGGTG CACGCCCCCC TCGGCCTGAA AGGGATTTTT GTTGTTGAAA
  ACGGGAAAAG GGTTGCCAGG CGGGGCGGCC CAGGCCAGCA CTCGGGGAAG CCGAGGCGGG
  AGGATCGGCG CGAGTCGGAG GTCAGCTCGG GCTACGAAGT CAGAAGATGG AAAAGATGCG
  AGTGGGATAA CGGGATAGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss45627151	mCV22567674	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs32265177					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135583886 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15082	CpG island 15082			within coordinates
Gm57106	predicted gene, 57106			652 bp upstream
Gm69173	predicted gene, 69173			202 bp upstream
Rr367748	regulatory region 367748			815 bp downstream
Rr398596	regulatory region 398596			449 bp downstream
Rr602160	regulatory region 602160			1399 bp distal
Rr602161	regulatory region 602161			818 bp distal
Rr602162	regulatory region 602162			663 bp distal
Rr602163	regulatory region 602163			within coordinates
Srsf10	serine and arginine-rich splicing factor 10			Intron
				Noncoding-Transcript-Variant
Tssr39638	transcription start site region 39638			831 bp downstream
Tssr39639	transcription start site region 39639			451 bp downstream
Tssr39640	transcription start site region 39640			415 bp downstream
Tssr39641	transcription start site region 39641			324 bp downstream
Tssr39642	transcription start site region 39642			61 bp upstream
Tssr39643	transcription start site region 39643			1311 bp upstream
Tssr43999	transcription start site region 43999			678 bp upstream