rs32260869 SNP Detail

Summary

• ID
  rs32260869
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135581207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACAGACA TATATATGTT
  ATTGCTTGCC GAGAGACCAT CTCTCTACTA TATCAATAGC AGTTAACTAT CCATGTAATT
  TTTTTAAAAA CATGATGTCT TTGTTGGAGA ATTTATTGAT AAATTCAATG AGCAAAACAT
  TGCCTGACTA GAAGAAGCAA ACCAGGCACC CATTAAACAG ATCCCGGATG CTAGAGAATT
  R
  GAGAAGTTAC TGGTTCAAAC ACACCACTAC CTTTGCTCCT TTGGACAGAG AAACTACAGT
  GTCGTGGCCT TGGAGGTCAC TTATGGATGG TACGTAGACC ATAGAAGGGG GTAAAGCAAA
  AATTGCCTGG AATATTCCTA TTTCTCTGCA GGATGTAATG GGTGGAGAAG TAGGCGGAAC
  AGATCATCTT CACACAGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45626726	mCV24798534	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss147552051	ENSMUSSNP1388384	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs32260869					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135581207 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15082	CpG island 15082	1538 bp proximal
Gm13000	predicted gene 13000	within coordinates
Gm57106	predicted gene, 57106	1238 bp downstream
Gm69173	predicted gene, 69173	within coordinates
Rr367748	regulatory region 367748	1681 bp upstream
Rr398596	regulatory region 398596	1929 bp upstream
Rr602158	regulatory region 602158	1108 bp distal
Rr602159	regulatory region 602159	107 bp proximal
Rr602160	regulatory region 602160	1259 bp proximal
Rr602161	regulatory region 602161	1361 bp proximal
Rr602162	regulatory region 602162	1862 bp proximal
Srsf10	serine and arginine-rich splicing factor 10	1851 bp upstream
Tssr39638	transcription start site region 39638	1811 bp upstream
Tssr43999	transcription start site region 43999	1973 bp downstream