rs32130056 SNP Detail

Summary

• ID
  rs32130056
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135581263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAGTTAA CTATCCATGT
  AATTTTTTTA AAAACATGAT GTCTTTGTTG GAGAATTTAT TGATAAATTC AATGAGCAAA
  ACATTGCCTG ACTAGAAGAA GCAAACCAGG CACCCATTAA ACAGATCCCG GATGCTAGAG
  AATTAGAGAA GTTACTGGTT CAAACACACC ACTACCTTTG CTCCTTTGGA CAGAGAAACT
  R
  CAGTGTCGTG GCCTTGGAGG TCACTTATGG ATGGTACGTA GACCATAGAA GGGGGTAAAG
  CAAAAATTGC CTGGAATATT CCTATTTCTC TGCAGGATGT AATGGGTGGA GAAGTAGGCG
  GAACAGATCA TCTTCACACA GCAGGAGAGA GAGATGATTG ACAGGCACAC TGTACACCCA
  AGCTGCTCAC AGAGAAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45611116	mCV24798533	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss147552058	ENSMUSSNP1960065	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
ss321353314	CHEV_4_135409867	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32130056					SNP	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135581263 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15082	CpG island 15082	1482 bp proximal
Gm13000	predicted gene 13000	within coordinates
Gm57106	predicted gene, 57106	1182 bp downstream
Gm69173	predicted gene, 69173	within coordinates
Rr367748	regulatory region 367748	1625 bp upstream
Rr398596	regulatory region 398596	1873 bp upstream
Rr602158	regulatory region 602158	1164 bp distal
Rr602159	regulatory region 602159	51 bp proximal
Rr602160	regulatory region 602160	1203 bp proximal
Rr602161	regulatory region 602161	1305 bp proximal
Rr602162	regulatory region 602162	1806 bp proximal
Rr602163	regulatory region 602163	1961 bp proximal
Srsf10	serine and arginine-rich splicing factor 10	1795 bp upstream
Tssr39638	transcription start site region 39638	1755 bp upstream
Tssr43999	transcription start site region 43999	1917 bp downstream