rs31795067 SNP Detail

Summary

• ID
  rs31795067
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:75454773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTTCACAA CCTAGTGGCT GTGTCCCTGA ACATGTTACT
  TAATCGGTGC CATCTGTAAA ATGGGACAGA TTGCACTTAA ACAGTAACAT GCTTGGCACA
  Y
  TGTTGCAGAT GCTCCCTGCA ACATGAATAT GCTGTCAGCC CCGCCCCCCC AATATGTCCT
  ATAAATGATG TGTAGAAGCA TACGGCATAG TGGTGTAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45070849	mCV25162856	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs31795067					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75454773 () rs orientation: forward

Symbol	Name	Function Class
Chpf	chondroitin polymerizing factor	Intron
Rr413448	regulatory region 413448	769 bp distal
Rr413449	regulatory region 413449	535 bp distal
Rr413450	regulatory region 413450	78 bp distal
Rr413451	regulatory region 413451	567 bp proximal
Rr413452	regulatory region 413452	1132 bp proximal
Rr413453	regulatory region 413453	1562 bp proximal
Tmem198	transmembrane protein 198	1403 bp upstream
Tssr7538	transcription start site region 7538	1377 bp upstream
Tssr7539	transcription start site region 7539	1400 bp upstream
Tssr12402	transcription start site region 12402	974 bp downstream
Tssr12403	transcription start site region 12403	996 bp downstream
Tssr12404	transcription start site region 12404	1019 bp downstream
Tssr12405	transcription start site region 12405	1032 bp downstream
Tssr12406	transcription start site region 12406	1155 bp downstream
Tssr12407	transcription start site region 12407	1260 bp downstream