rs31338926 SNP Detail

Summary

• ID
  rs31338926
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:38941623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCGG CTCCAACGGT GTGGACCACC
  R
  CTCCTACCGC ATCGTCAGCG GCAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45524614	mCV24520070	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss134846153	ENSMUSSNP5811503	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320724103	CHEV_3_38786396	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31338926					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38941623 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	513 bp upstream
Cpgi13105	CpG island 13105	within coordinates
Fat4	FAT atypical cadherin 4	Coding-NonSynonymous
Gm56780	predicted gene, 56780	1026 bp downstream
Gm65329	predicted gene, 65329	1928 bp upstream
Rr575717	regulatory region 575717	1939 bp distal
Rr575719	regulatory region 575719	1775 bp distal
Rr575720	regulatory region 575720	1351 bp distal
Rr575721	regulatory region 575721	524 bp distal
Rr575722	regulatory region 575722	288 bp proximal
Rr575723	regulatory region 575723	409 bp proximal
Rr575724	regulatory region 575724	558 bp proximal
Rr575725	regulatory region 575725	775 bp proximal
Rr575726	regulatory region 575726	818 bp proximal
Tssr28931	transcription start site region 28931	1772 bp downstream
Tssr28932	transcription start site region 28932	1746 bp downstream
Tssr28933	transcription start site region 28933	1710 bp downstream
Tssr28934	transcription start site region 28934	1620 bp downstream
Tssr28935	transcription start site region 28935	1587 bp downstream
Tssr28936	transcription start site region 28936	1569 bp downstream