rs31255865 SNP Detail

Summary

• ID
  rs31255865
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78634594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA AAAACAACTC TGCTACGAAC
  W
  GTCTCTTTCT AATATTACAC TCCAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45013102	mCV22632345	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss144751874	ENSMUSSNP6172509	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A	A
ss319804033	CHEV_1_78653452	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31255865					SNP	T	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78634594 () rs orientation: forward

Symbol	Name	Function Class
Acsl3	acyl-CoA synthetase long-chain family member 3	1006 bp upstream
Gm69507	predicted gene, 69507	601 bp downstream
Rr371565	regulatory region 371565	1177 bp downstream
Rr396121	regulatory region 396121	820 bp upstream
Rr413771	regulatory region 413771	164 bp distal
Rr413772	regulatory region 413772	458 bp proximal
Rr413773	regulatory region 413773	1172 bp proximal
Rr413774	regulatory region 413774	1428 bp proximal
Rr413775	regulatory region 413775	1574 bp proximal
Tssr7581	transcription start site region 7581	979 bp upstream
Tssr7582	transcription start site region 7582	997 bp upstream
Tssr12428	transcription start site region 12428	1396 bp downstream
Tssr12429	transcription start site region 12429	1413 bp downstream
Utp14b	UTP14B small subunit processome component	1006 bp upstream