rs30077917 SNP Detail

Summary

• ID
  rs30077917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:82931821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCTACCATTA CAGCTGCTAG GAATTGAACC TGGGTCCTCT GGATGAGCAG CAAGTGCTCT
  TAACTGCTGA GCCATCCCTC CAGCCTATGA TGTGCTATTC ATTTTACATG TTCCTAGTTT
  TAATTTCTTG TCTTATTTGG GATTTTTACA TCTAAGTTTA TGGTAAAAAT AATTTTACTT
  TTCTCCTTTT TTATTAACAA AATTGGTTCT TTGACAATCA GATATATATA CATATATATA
  TATATGTATA TATGTACATG TGTATACACA CACACACACA CACACACACA CACACACATA
  Y
  ATATATATAT ATATATATAT ATATATATAT ATATATACAT ATATATCATT TGGAATACTC
  TCCACCCTAT CACCTGCTCT TATTTCCTCC CACCCCTGTC CACCCATATT TACTAGTTTT
  TGTTTTGTTT ATTGTCCCAC TGAGTTCAAC TAGGGTCATC TGTGTGATCC AGAGCATAGC
  AGTTCATGTA TAACTGGATA CTGACTATGC CTCCCATCCT CCCAGATTCT ATTAATTCTA
  TTGATTCTGC AAATCAATTA TAATAAGCAG TAGAACCCTA TCCCTTCCAT AGCTGACTAT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J
ss45893900	mCV23177988	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J
rs30077917					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:82931821 () rs orientation: forward

Symbol	Name	Function Class
Gm19287	predicted gene, 19287	1704 bp downstream
M1ap	meiosis 1 associated protein	Intron
Rr379683	regulatory region 379683	1095 bp upstream