Gm19287 Pseudogene Detail

Summary

• Symbol
  Gm19287
• Name
  predicted gene, 19287

• Feature Type
  pseudogene
• IDs
  MGI:5011472
  NCBI Gene: 102635339
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:82929761-82930117 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 35.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  12 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011472	pseudogene	Chr6:82929761-82930118 (+)
129S1/SvImJ	ENSMUSG00200012334	pseudogene	Chr6:79891775-79892132 (+)
A/J	ENSMUSG00195012294	pseudogene	Chr6:79576025-79576382 (+)
AKR/J	ENSMUSG00220002208	pseudogene	Chr6:78519517-78519874 (+)
BALB/cJ	ENSMUSG00180010199	pseudogene	Chr6:79952065-79952422 (+)
C3H/HeJ	ENSMUSG00175038757	pseudogene	Chr6:97457906-97458263 (-)
C57BL/6NJ	ENSMUSG00215016145	pseudogene	Chr6:79949224-79949581 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011961	pseudogene	Chr6:79092439-79092792 (+)
CAST/EiJ	ENSTCUG00005008378	pseudogene	Chr6:79962047-79962397 (+)
CBA/J	ENSMUSG00210011426	pseudogene	Chr6:79767630-79767987 (+)
DBA/2J	ENSMUSG00185001094	pseudogene	Chr6:80314668-80315025 (+)
FVB/NJ	ENSMUSG00205028501	pseudogene	Chr6:78993747-78994104 (+)
JF1/MsJ	ENSUMUG00000024112	pseudogene	Chr6:79368753-79369103 (+)
LP/J	ENSMUSG00230050752	pseudogene	Chr6:81449060-81449417 (+)
NOD/ShiLtJ	ENSMUSG00190001648	pseudogene	Chr6:79396920-79397277 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010006337	pseudogene	Chr6:78719635-78719985 (+)
SPRET/EiJ	ENSMSPG00010042363	pseudogene	Chr6:80873845-80874202 (+)
WSB/EiJ	ENSIUOG00005019507	pseudogene	Chr6:80334627-80334984 (+)

Homology

• Gene Tree
  Gm19287
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm19287
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000107701 (Evidence)
• NCBI Gene
  102635339

Representative Sequences			Length	Strain/Species
genomic	102635339	NCBI Gene Model | MGI Sequence Detail	357	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48

TSS for Gm19287:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57262	Chr6:82929718-82929724 (+)	-40 bp