rs30054444 SNP Detail

Summary

• ID
  rs30054444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:38942126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC TCACCGGGCG CGCCGAAGCG
  Y
  TTATCCAGTT GTTAGATGTC AATGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45389829	mCV24520069	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss134846155	ENSMUSSNP2853274	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320724104	CHEV_3_38786899	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30054444					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38942126 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	1016 bp upstream
Cpgi13105	CpG island 13105	within coordinates
Fat4	FAT atypical cadherin 4	Coding-NonSynonymous
Gm56780	predicted gene, 56780	1529 bp downstream
Rr575720	regulatory region 575720	1854 bp distal
Rr575721	regulatory region 575721	1027 bp distal
Rr575722	regulatory region 575722	194 bp distal
Rr575723	regulatory region 575723	73 bp distal
Rr575724	regulatory region 575724	55 bp proximal
Rr575725	regulatory region 575725	272 bp proximal
Rr575726	regulatory region 575726	315 bp proximal