rs30015263 SNP Detail

Summary

• ID
  rs30015263
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:38941369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGCCAGC TCCTGAGAGT
  CTGGGGGCTG CTATCACTGC TCCCCGGCTC CGCCCGAGTC CAAGCGGCCG AACAGCGCCA
  GGTGTTCCAG GTGATGGAAG AGCAGCCCCC AGGGACTCTG GTGGGCACCA TCCCAACGCG
  TCCTGGCTTT ACCTATCGTC TCAGTGAAAG CCACGCCCTG TTCGCGATTA ACAGCAGCAC
  S
  GGAGCGCTGT ACACCACCGC TACCATCGAC CGCGAGAGCC TGCCCAGCGA TGTGGTCAAC
  CTGGTGGTCC TTTCCAGCTC CCCCACATAC CCTACCGAGG TGCGAGTGCT GGTGCGTGAC
  CTCAATGACA ACGCCCCAGT CTTCCCAGAC CCTTCGATCG TGGTCACCTT CAAGGAGGAC
  AGTGGTAGCG GGCGTCAGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45387328	mCV24520080	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss134846151	ENSMUSSNP43660	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		C
ss320724102	CHEV_3_38786142	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30015263					SNP	G	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38941369 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	259 bp upstream
Cpgi13105	CpG island 13105	within coordinates
Fat4	FAT atypical cadherin 4	Coding-Synonymous
Gm56780	predicted gene, 56780	772 bp downstream
Gm65329	predicted gene, 65329	1674 bp upstream
Rr575717	regulatory region 575717	1685 bp distal
Rr575719	regulatory region 575719	1521 bp distal
Rr575720	regulatory region 575720	1097 bp distal
Rr575721	regulatory region 575721	270 bp distal
Rr575722	regulatory region 575722	542 bp proximal
Rr575723	regulatory region 575723	663 bp proximal
Rr575724	regulatory region 575724	812 bp proximal
Rr575725	regulatory region 575725	1029 bp proximal
Rr575726	regulatory region 575726	1072 bp proximal
Tssr28930	transcription start site region 28930	1889 bp downstream
Tssr28931	transcription start site region 28931	1518 bp downstream
Tssr28932	transcription start site region 28932	1492 bp downstream
Tssr28933	transcription start site region 28933	1456 bp downstream
Tssr28934	transcription start site region 28934	1366 bp downstream
Tssr28935	transcription start site region 28935	1333 bp downstream
Tssr28936	transcription start site region 28936	1315 bp downstream