rs29167678 SNP Detail

Summary

• ID
  rs29167678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:101050714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT TCTAAATACC AGAATGCAAT
  Y
  CTTTCAAGCA TCTAGATGGA GCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38967462	mCV24527957	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss137998154	ENSMUSSNP3761697	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss324139387	CHEV_12_102322665	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29167678					SNP	T	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101050714 () rs orientation: forward

Symbol	Name	Function Class
D130020L05Rik	RIKEN cDNA D130020L05 gene	within coordinates
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	mRNA-UTR
Rr387703	regulatory region 387703	within coordinates
Rr471410	regulatory region 471410	1964 bp distal
Rr471411	regulatory region 471411	654 bp distal
Rr471412	regulatory region 471412	within coordinates
Rr471413	regulatory region 471413	5 bp proximal
Tssr114723	transcription start site region 114723	1482 bp downstream
Tssr114724	transcription start site region 114724	712 bp downstream
Tssr114725	transcription start site region 114725	653 bp downstream
Tssr114726	transcription start site region 114726	623 bp downstream
Tssr117352	transcription start site region 117352	968 bp upstream
Tssr117353	transcription start site region 117353	844 bp upstream
Tssr117354	transcription start site region 117354	738 bp upstream