D130020L05Rik Gene Detail

Summary

• Symbol
  D130020L05Rik
• Name
  RIKEN cDNA D130020L05 gene
• Synonyms
  9430007L23Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:2450270
  NCBI Gene: 319760
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr12:101048710-101055186 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 51.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  273 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2450270	lncRNA gene	Chr12:101048710-101055186 (+)
129S1/SvImJ	ENSMUSG00200026143	lncRNA gene	Chr12:92817423-92823692 (+)
A/J	ENSMUSG00195022565	lncRNA gene	Chr12:95378537-95385015 (+)
AKR/J	ENSMUSG00220044102	lncRNA gene	Chr12:93285316-93291590 (+)
BALB/cJ	ENSMUSG00180038718	lncRNA gene	Chr12:94535439-94541715 (+)
C3H/HeJ	ENSMUSG00175034368	lncRNA gene	Chr12:97191477-97197953 (+)
C57BL/6NJ	ENSMUSG00215041915	lncRNA gene	Chr12:93846803-93853279 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004894	lincRNA gene	Chr12:95702879-95709190 (+)
CAST/EiJ	ENSTCUG00005021776	lncRNA gene	Chr12:93487646-93493966 (+)
CBA/J	ENSMUSG00210014903	lncRNA gene	Chr12:94194296-94200569 (+)
DBA/2J	ENSMUSG00185046754	lncRNA gene	Chr12:95992351-95998621 (+)
FVB/NJ	ENSMUSG00205021222	lncRNA gene	Chr12:93364016-93370288 (+)
JF1/MsJ	ENSUMUG00000028686	lncRNA gene	Chr12:100701481-100707794 (+)
LP/J	ENSMUSG00230031349	lncRNA gene	Chr12:103082495-103088764 (+)
NOD/ShiLtJ	ENSMUSG00190005326	lncRNA gene	Chr12:91946464-91952739 (-)
NZO/HlLtJ	ENSMUSG00225039226	lncRNA gene	Chr12:104806243-104812512 (+)
PWK/PhJ	ENSLUMG00010014441	lncRNA gene	Chr12:94215329-94221617 (+)
SPRET/EiJ	ENSMSPG00010020239	lncRNA gene	Chr12:96636489-96642861 (+)
WSB/EiJ	ENSIUOG00005010052	lncRNA gene	Chr12:93201151-93207437 (+)

Homology

• Gene Tree
  D130020L05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  43
• Chemically induced (other)
  1
• Gene trapped
  42
• Genomic Mutations
  1 involving D130020L05Rik
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  4
• UniProt
  1

• Ensembl
  ENSMUSG00000097121 (Evidence)
• NCBI Gene
  319760

Representative Sequences			Length	Strain/Species
genomic	319760	NCBI Gene Model | MGI Sequence Detail	6477	C57BL/6J
transcript	NR_038050	RefSeq | MGI Sequence Detail	2935	C57BL/6
polypeptide	Q8C2V0	UniProt | EBI | MGI Sequence Detail	178	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:2442679

References

• Summaries
  All 18

  Phenotypes 7
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for D130020L05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114723	Chr12:101049198-101049232 (+)	505 bp
Tssr114724	Chr12:101049971-101050002 (+)	1,277 bp
Tssr114725	Chr12:101050015-101050061 (+)	1,328 bp
Tssr114726	Chr12:101050065-101050091 (+)	1,368 bp