rs27367843 SNP Detail

Summary

• ID
  rs27367843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93810969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCCCAGA GAAGCCACCT
  CTGTTTGGGT TTCAGCAGCT GCCTGCCTGT GGACGGCTCC AGAGTCACTG ACACGTATTT
  ATATCTCCAT TTTGCTAACG TCATAAGGAA CAAACATGTT CAGATCTTCC CCAGAGGCAC
  AAGGCCATTT GTATTTCTTC AAATTAAAGG GGGCAGAGCA GGAGGCAAAA AGCTTTTGGA
  Y
  CAAATCATCT GTGAGTACAG CCAGAGCAAT TTTTAATTTG CTTAATGATA ACCTTGATTT
  AGAGATTTGT CTCAAAGTAA GTGTTCCTGT AGTAGACATG TTGACAAGGT GACGTGCTGG
  CAGCTCTCAT TCAGGAGGAG TAGAACCTGA GAAGCAAACA CCACGCTTTC TGAACAGCCA
  CATCACGGAA GTGCTTGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37596562	NES09089099	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27367843					SNP	T	T	T	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37596562	NES09089099	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93810969 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alkbh3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase			mRNA-UTR
				Noncoding-Transcript-Variant
Alkbh3os1	alkB homolog 3, opposite strand 1			within coordinates
Gm27027	predicted gene, 27027			Intron
Rr561320	regulatory region 561320			1355 bp distal
Rr561321	regulatory region 561321			610 bp distal
Rr561322	regulatory region 561322			500 bp distal
Rr561323	regulatory region 561323			1570 bp proximal