rs27367826 SNP Detail

Summary

• ID
  rs27367826
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93813823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGATCTC TCCGCTTTCA
  GGGAGGACAA CATGGCGTGG ATCAGTAAAC TGTACCGACT CGAGGATGAA GGTGAAATGA
  CAATGAGAGG GAGACTTCAT GAGCACACAA GGGCAATTCT GAGATCTAGA ACACCCACAG
  CCCCCATGGG GAGGTAGAGG TGGGACAGGA GAGCACTGTG ACTCCATCTG GAACCATGAA
  R
  CCACAATGGA GCTGAGAGGC ACAAAGGAGT TCCACATGCA AGAGGCAAGT ATCAGCACTG
  GTGGAAATGA AGCATAAAGA TCTCGATTTT TCAAGGGAAA GAAAATGTCA GATGTATTTT
  GCACATTTAA TATCCAGCAT AGCCGCTAAC CACACCAAAA GGGTGAGCAA TTCAGGTTGT
  CCCTAAGCAG TGGGATAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37596545	NES09089032	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27367826					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37596545	NES09089032	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93813823 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alkbh3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase			Intron
				Noncoding-Transcript-Variant
Alkbh3os1	alkB homolog 3, opposite strand 1			within coordinates
Gm27027	predicted gene, 27027			Intron
Rr561323	regulatory region 561323			161 bp distal
Tssr25307	transcription start site region 25307			1310 bp downstream
Tssr25308	transcription start site region 25308			1333 bp downstream
Tssr25309	transcription start site region 25309			1379 bp downstream