rs27328623 SNP Detail

Summary

• ID
  rs27328623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146678852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGATGGAGA CTGCTCAGAG
  TTGGCTTTAT AGTTATTTTT GCAAGTTCTG CCCGGTACCC ACAGTATTGG CCAGAAAAGC
  AAAAGAGGCC GCTGCAATTT ATTCCAATGG GCGGTTTTTA AGAAGCTGGC AATTTGAACC
  GGCTGGGTGT TATTTAGTGC AATATGAAAT CAAATGATCC TATTTCTCAA ATAACAGTGT
  Y
  TGTGAGGAGA AGTGAATCCT CTGAAAGGGT AATTGTCTGC TGATGGTGTT TCCCATTATA
  CCCGATCTTG GCCTAAATGA TGCTGGGCGG CAGGGCGGAG AGTGAGGGGT GAAATCAAAG
  CACGCAACTC GGGCTCCGGA GGAAGAAAAG GTCCCTCTAG ATCGCTTACC CACAAGTCTA
  GCGCACAATG CGGCCGATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37498251	NES08928366	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27328623					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37498251	NES08928366	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146678852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12369	CpG island 12369	1548 bp distal
Cpgi12370	CpG island 12370	386 bp distal
Cpgi12371	CpG island 12371	70 bp proximal
Gm14114	predicted gene 14114	within coordinates
Gm34978	predicted gene, 34978	1380 bp upstream
Gm57437	predicted gene, 57437	within coordinates
Rr566734	regulatory region 566734	1556 bp distal
Rr566735	regulatory region 566735	1290 bp proximal
Rr566736	regulatory region 566736	1864 bp proximal