rs27328622 SNP Detail

Summary

• ID
  rs27328622
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146678915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTGGCCA GAAAAGCAAA
  AGAGGCCGCT GCAATTTATT CCAATGGGCG GTTTTTAAGA AGCTGGCAAT TTGAACCGGC
  TGGGTGTTAT TTAGTGCAAT ATGAAATCAA ATGATCCTAT TTCTCAAATA ACAGTGTCTG
  TGAGGAGAAG TGAATCCTCT GAAAGGGTAA TTGTCTGCTG ATGGTGTTTC CCATTATACC
  S
  GATCTTGGCC TAAATGATGC TGGGCGGCAG GGCGGAGAGT GAGGGGTGAA ATCAAAGCAC
  GCAACTCGGG CTCCGGAGGA AGAAAAGGTC CCTCTAGATC GCTTACCCAC AAGTCTAGCG
  CACAATGCGG CCGATTGCAT CACCGATTTG GATGCTATTC TGCAGATCTC CGACATCATC
  AAACTGAAGT GATCTTGGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37498250	NES08928367	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27328622					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37498250	NES08928367	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146678915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12369	CpG island 12369	1611 bp distal
Cpgi12370	CpG island 12370	449 bp distal
Cpgi12371	CpG island 12371	7 bp proximal
Gm14114	predicted gene 14114	within coordinates
Gm34978	predicted gene, 34978	1317 bp upstream
Gm57437	predicted gene, 57437	within coordinates
Rr566734	regulatory region 566734	1619 bp distal
Rr566735	regulatory region 566735	1227 bp proximal
Rr566736	regulatory region 566736	1801 bp proximal
Tssr20612	transcription start site region 20612	1993 bp upstream