rs27328620 SNP Detail

Summary

• ID
  rs27328620
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146679087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGCTGAT GGTGTTTCCC
  ATTATACCCG ATCTTGGCCT AAATGATGCT GGGCGGCAGG GCGGAGAGTG AGGGGTGAAA
  TCAAAGCACG CAACTCGGGC TCCGGAGGAA GAAAAGGTCC CTCTAGATCG CTTACCCACA
  AGTCTAGCGC ACAATGCGGC CGATTGCATC ACCGATTTGG ATGCTATTCT GCAGATCTCC
  K
  ACATCATCAA ACTGAAGTGA TCTTGGGAAT AAGAGAATAA AACTGACTCT CTTTTCGAAA
  CTTTAGGAAT CCTTAGTATC TTGGCCGCAT TGTTGAGCCA ACAGATAACC AAGATAGTAA
  AACCCAGTTT GGCCATGCTC CCACCTCCTT ATCCCAAGTT AATATTGAGA ACACAGTAGT
  TCTTTCCAAG ACACACTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37498248	NES08928369	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27328620					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37498248	NES08928369	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146679087 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12369	CpG island 12369	1783 bp distal
Cpgi12370	CpG island 12370	621 bp distal
Cpgi12371	CpG island 12371	7 bp distal
Gm14114	predicted gene 14114	within coordinates
Gm34978	predicted gene, 34978	1145 bp upstream
Gm57437	predicted gene, 57437	within coordinates
Rr566734	regulatory region 566734	1791 bp distal
Rr566735	regulatory region 566735	1055 bp proximal
Rr566736	regulatory region 566736	1629 bp proximal
Tssr20612	transcription start site region 20612	1821 bp upstream