rs27328618 SNP Detail

Summary

• ID
  rs27328618
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146679388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGATAACC AAGATAGTAA
  AACCCAGTTT GGCCATGCTC CCACCTCCTT ATCCCAAGTT AATATTGAGA ACACAGTAGT
  TCTTTCCAAG ACACACTCTC TAGGCTTTTC CCTGTCTGGT CTCCTCGGAG CCCACATTAG
  ATCTTGTATA AGGAGTTGCC TGCACCAGAC AGCAATTTGG TGTGTATGGT AGGAAGAGAA
  R
  GGTTCACACA GGACTTTAAA ATTGATTCTC TGTAGATCCA AGCCAGTTTC TGGCAGAACC
  CGATATGGGG CCAGCAGTGT CTGAGTAAAG CACAGATGAA AGACAAACGA AAGGATGGGT
  TTAGTTACTG GAACAAAAGT GTCCCACCGG AAACTACATG TTAGCCTTGG GGCATGTCAG
  TACCCCAGAG TCACAAAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37498246	NES08928371	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A	G	G	G		G	G	G	G		G
ss320546133	CHEV_2_146663204	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27328618					SNP	G	A	G	A	G	A	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37498246	NES08928371	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146679388 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12370	CpG island 12370	922 bp distal
Cpgi12371	CpG island 12371	308 bp distal
Cpgi12372	CpG island 12372	1900 bp proximal
Gm14114	predicted gene 14114	within coordinates
Gm34978	predicted gene, 34978	844 bp upstream
Gm57437	predicted gene, 57437	within coordinates
Rr566735	regulatory region 566735	754 bp proximal
Rr566736	regulatory region 566736	1328 bp proximal
Tssr20612	transcription start site region 20612	1520 bp upstream