rs27328617 SNP Detail

Summary

• ID
  rs27328617
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146679488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCTTTTC CCTGTCTGGT
  CTCCTCGGAG CCCACATTAG ATCTTGTATA AGGAGTTGCC TGCACCAGAC AGCAATTTGG
  TGTGTATGGT AGGAAGAGAA GGGTTCACAC AGGACTTTAA AATTGATTCT CTGTAGATCC
  AAGCCAGTTT CTGGCAGAAC CCGATATGGG GCCAGCAGTG TCTGAGTAAA GCACAGATGA
  R
  AGACAAACGA AAGGATGGGT TTAGTTACTG GAACAAAAGT GTCCCACCGG AAACTACATG
  TTAGCCTTGG GGCATGTCAG TACCCCAGAG TCACAAAGGC AATATTCTGG GCCTGCCTTT
  CTTCAAACTT CTGCTTTATC TACTGAGACA ACAGCTTTGA CCTTAAACCC TCTCTAACAC
  CTTGAGGGGA GTGGCCTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37498245	NES08928372	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G		G		A		A	G	A	A		G
ss45275077	mCV23999456	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		A
ss147873666	ENSMUSSNP4533895	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
ss320546134	CHEV_2_146663304	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27328617					SNP	A	A	G	A	G	A	G	A	G	A	A	G	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37498245	NES08928372	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146679488 () rs orientation: forward

Symbol	Name	Function Class
Gm14114	predicted gene 14114	within coordinates
Gm34978	predicted gene, 34978	744 bp upstream
Gm57437	predicted gene, 57437	within coordinates
Rr566735	regulatory region 566735	654 bp proximal
Rr566736	regulatory region 566736	1228 bp proximal
Rr566737	regulatory region 566737	1963 bp proximal
Tssr20612	transcription start site region 20612	1420 bp upstream