rs27328616 SNP Detail

Summary

• ID
  rs27328616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146679634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCTGGCA GAACCCGATA
  TGGGGCCAGC AGTGTCTGAG TAAAGCACAG ATGAAAGACA AACGAAAGGA TGGGTTTAGT
  TACTGGAACA AAAGTGTCCC ACCGGAAACT ACATGTTAGC CTTGGGGCAT GTCAGTACCC
  CAGAGTCACA AAGGCAATAT TCTGGGCCTG CCTTTCTTCA AACTTCTGCT TTATCTACTG
  R
  GACAACAGCT TTGACCTTAA ACCCTCTCTA ACACCTTGAG GGGAGTGGCC TCTTTAGAGC
  CTGAGCCCCG GACAGAAGAG CAGCCTTAGA ATGCAGGTCT GTCCAGGTTT TAAGCCACAA
  CACTTAAGGC CAAGGACCAA AGCAGCTTCC AGGCCCTTCA CCTTCCAGGC CCCTTCACTT
  CCCCACCCTT CACAATTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37498244	NES08928373	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A	G	A	A	A		A	A	A	A		A
ss320546135	CHEV_2_146663450	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27328616					SNP	A	G	A	G	A	G	A	A	A	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37498244	NES08928373	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146679634 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12370	CpG island 12370	1168 bp distal
Cpgi12371	CpG island 12371	554 bp distal
Cpgi12372	CpG island 12372	1654 bp proximal
Gm14114	predicted gene 14114	within coordinates
Gm34978	predicted gene, 34978	598 bp upstream
Gm57437	predicted gene, 57437	134 bp downstream
Rr566735	regulatory region 566735	508 bp proximal
Rr566736	regulatory region 566736	1082 bp proximal
Rr566737	regulatory region 566737	1817 bp proximal
Tssr20612	transcription start site region 20612	1274 bp upstream