rs27328615 SNP Detail

Summary

• ID
  rs27328615
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146680040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCAACCAC CTCCTCCCCC
  TTCAGAATTT TTTTCTCCCT GGAGGAAGAA TATCCTGAAA TTCTTGTGAG TTTACATCTG
  TTAACTTGGA GTCATTTCAG GCCAAACCTC TGTGTATAGG GTTTGTTTCT GCTCTAGATG
  GGTAGGTTTC TTTTCATTTT CTTTGGGCAT ATATAATGTG TCATATATAC ATTTGCATGC
  M
  CAATAAGATA CATACATATA CATACGTGCT TATGGCACAT TTTTCTATAT CACGGCATAT
  TTACAGGTAT ACTTAGTTAT TAGTGGTTTT CTTCCCTCCA CTATTTGAAA ATAGTGGTGC
  TATTTTCAAA TGAAATTAGG TGGGAAGGGT GTCATTTTTC TCTATCCAAG TAGCTGCCTT
  AGGAAGCTTG CAATCATTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37498243	NES08928374	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	C	A		A		A	A		A	A	A	A		A
ss45276706	mCV23999458	ABI	CRAMUS_MOUSE	f	SNP	A	A	C				A		A
ss147873676	ENSMUSSNP6801282	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						A
ss320546138	CHEV_2_146663856	CHEVERUD	SCREENING_POP	f	SNP												C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27328615					SNP	A	A	C	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37498243	NES08928374	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146680040 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12370	CpG island 12370	1574 bp distal
Cpgi12371	CpG island 12371	960 bp distal
Cpgi12372	CpG island 12372	1248 bp proximal
Gm14114	predicted gene 14114	within coordinates
Gm34978	predicted gene, 34978	192 bp upstream
Gm57437	predicted gene, 57437	540 bp downstream
Rr566735	regulatory region 566735	102 bp proximal
Rr566736	regulatory region 566736	676 bp proximal
Rr566737	regulatory region 566737	1411 bp proximal
Tssr20612	transcription start site region 20612	868 bp upstream