rs27328614 SNP Detail

Summary

• ID
  rs27328614
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146680410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA CCCGTGACCA TTTCTGAGCT
  R
  AAAGTTCAGC CTAGCTAGGG GCCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37498242	NES08928375	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A		G	A	A		A	A	A		G
ss45212394	mCV23999468	ABI	CRAMUS_MOUSE	f	SNP	A	A	G			A		A
ss147873680	ENSMUSSNP1068067	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					A
ss320546139	CHEV_2_146664226	CHEVERUD	SCREENING_POP	f	SNP										G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27328614					SNP	A	A	G	A	A	A	G	A	A	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37498242	NES08928375	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146680410 () rs orientation: forward

Symbol	Name	Function Class
Gm14114	predicted gene 14114	within coordinates
Gm34978	predicted gene, 34978	within coordinates
Gm57437	predicted gene, 57437	910 bp downstream
Rr566735	regulatory region 566735	within coordinates
Rr566736	regulatory region 566736	306 bp proximal
Rr566737	regulatory region 566737	1041 bp proximal
Tssr20612	transcription start site region 20612	498 bp upstream