rs27328613 SNP Detail

Summary

• ID
  rs27328613
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146680592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGACCATT TCTGAGCTAA
  AAGTTCAGCC TAGCTAGGGG CCTTCTGCAA TTCTGGACAT GGTATTTTGA TTTTTATCCT
  TCTACTTTGG CTCTCAACAT ATCTCTGGGA TGCAGTTTCT TAGGGTCTGC TCCAGGAGGG
  CCTGCTCACC TCTGGCTAAA TGGTAAAGCC TAAAAATAGG GTCGTGAAAT AAGAGGTGGC
  K
  TTCCCCGGGT CCCACCAGCT GCCTCTCAGG ACCCCTCTGA GGCTTCTGTC CCCAGCGGGG
  AATCTTAGCC CTATTGAACT GCAAAGGCCG CTAGCCACCT GCCTCGCCGG AGGCAGAACT
  GTGTAGCTAC AGCCTCTGCG GAGCGTCCAG CCTCCGCGCT TTTACTCTGC GCGGCCCTGA
  GCTCTCTTCT TGGGAGGTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37498241	NES08928376	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27328613					SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37498241	NES08928376	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146680592 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12371	CpG island 12371	1512 bp distal
Cpgi12372	CpG island 12372	696 bp proximal
Gm14114	predicted gene 14114	within coordinates
Gm34978	predicted gene, 34978	within coordinates
Gm57437	predicted gene, 57437	1092 bp downstream
Rr566735	regulatory region 566735	within coordinates
Rr566736	regulatory region 566736	124 bp proximal
Rr566737	regulatory region 566737	859 bp proximal
Tssr20612	transcription start site region 20612	316 bp upstream