rs27328612 SNP Detail

Summary

• ID
  rs27328612
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146680640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTGGAC ATGGTATTTT
  GATTTTTATC CTTCTACTTT GGCTCTCAAC ATATCTCTGG GATGCAGTTT CTTAGGGTCT
  GCTCCAGGAG GGCCTGCTCA CCTCTGGCTA AATGGTAAAG CCTAAAAATA GGGTCGTGAA
  ATAAGAGGTG GCGTTCCCCG GGTCCCACCA GCTGCCTCTC AGGACCCCTC TGAGGCTTCT
  R
  TCCCCAGCGG GGAATCTTAG CCCTATTGAA CTGCAAAGGC CGCTAGCCAC CTGCCTCGCC
  GGAGGCAGAA CTGTGTAGCT ACAGCCTCTG CGGAGCGTCC AGCCTCCGCG CTTTTACTCT
  GCGCGGCCCT GAGCTCTCTT CTTGGGAGGT AAGAGGTGGT CACACCCGAA TCTCAGCTGA
  ACCCCTTTTA AAATGCAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37498240	NES08928377	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G		G		G		G	G	G	G		G
ss45252250	mCV23999469	ABI	CRAMUS_MOUSE	f	SNP	G	G	A				G		G
ss147873687	ENSMUSSNP5879200	ENSEMBL	ENSEMBL_Sanger	f	SNP			A						G
ss320546140	CHEV_2_146664456	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27328612					SNP	G	G	A	G	A	G	G	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37498240	NES08928377	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146680640 () rs orientation: forward

Symbol	Name	Function Class
Gm14114	predicted gene 14114	within coordinates
Gm34978	predicted gene, 34978	within coordinates
Gm57437	predicted gene, 57437	1140 bp downstream
Rr566735	regulatory region 566735	within coordinates
Rr566736	regulatory region 566736	76 bp proximal
Rr566737	regulatory region 566737	811 bp proximal
Tssr20612	transcription start site region 20612	268 bp upstream