rs27328611 SNP Detail

Summary

• ID
  rs27328611
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146680760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAAAATA GGGTCGTGAA
  ATAAGAGGTG GCGTTCCCCG GGTCCCACCA GCTGCCTCTC AGGACCCCTC TGAGGCTTCT
  GTCCCCAGCG GGGAATCTTA GCCCTATTGA ACTGCAAAGG CCGCTAGCCA CCTGCCTCGC
  CGGAGGCAGA ACTGTGTAGC TACAGCCTCT GCGGAGCGTC CAGCCTCCGC GCTTTTACTC
  W
  GCGCGGCCCT GAGCTCTCTT CTTGGGAGGT AAGAGGTGGT CACACCCGAA TCTCAGCTGA
  ACCCCTTTTA AAATGCAAAG GAACCCGTTT CCTCACGGTT CTGGTTCCGT TCCCCCAAAC
  AACTAGGAAA CCCCTAGTTT TGCTGAGGCT TCTGCAGTTC CAGCACATCG GTTTGATGGG
  GCGGCTGCAC ACACCTTCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37498239	NES08928378	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A	T	A		T	T	T	T		T	T	T		A
ss45260244	mCV23999470	ABI	CRAMUS_MOUSE	f	SNP		A					T		T
ss147873691	ENSMUSSNP4687426	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							T
ss320546141	CHEV_2_146664576	CHEVERUD	SCREENING_POP	f	SNP												A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27328611					SNP	T	A	T	A	T	A	T	T	T	T	T	A	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37498239	NES08928378	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146680760 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12371	CpG island 12371	1680 bp distal
Cpgi12372	CpG island 12372	528 bp proximal
Gm14114	predicted gene 14114	within coordinates
Gm34978	predicted gene, 34978	within coordinates
Gm57437	predicted gene, 57437	1260 bp downstream
Rr566735	regulatory region 566735	45 bp distal
Rr566736	regulatory region 566736	within coordinates
Rr566737	regulatory region 566737	691 bp proximal
Tssr20612	transcription start site region 20612	148 bp upstream