rs27328610 SNP Detail

Summary

• ID
  rs27328610
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146680926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCGGAG CGTCCAGCCT
  CCGCGCTTTT ACTCTGCGCG GCCCTGAGCT CTCTTCTTGG GAGGTAAGAG GTGGTCACAC
  CCGAATCTCA GCTGAACCCC TTTTAAAATG CAAAGGAACC CGTTTCCTCA CGGTTCTGGT
  TCCGTTCCCC CAAACAACTA GGAAACCCCT AGTTTTGCTG AGGCTTCTGC AGTTCCAGCA
  S
  ATCGGTTTGA TGGGGCGGCT GCACACACCT TCCAGGTTGA ACCCTGGGCT GGCGTGAACA
  CAGGTCAGCC CAAGATTGGG CCAGGAACTG CGGCCTCTGG AAGAGTGGCT TCGGGTGGTC
  CTACCCGACG GTCACCAGGT GAGTATAGGA AAAGCCATTC AAGGTCAAGA TGAGTGGGGG
  CGGGGGCCGG GTGGAGACGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37498238	NES08928379	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27328610					SNP	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37498238	NES08928379	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146680926 () rs orientation: forward

Symbol	Name	Function Class
Gm14114	predicted gene 14114	within coordinates
Gm34978	predicted gene, 34978	within coordinates
Gm57437	predicted gene, 57437	1426 bp downstream
Rr566735	regulatory region 566735	211 bp distal
Rr566736	regulatory region 566736	within coordinates
Rr566737	regulatory region 566737	525 bp proximal
Tssr20612	transcription start site region 20612	5 bp downstream