rs263562084 SNP Detail

Summary

• ID
  rs263562084
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:75454562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACGA ACGGGAGGAT AAGACTGTCT
  Y
  TCCCACGAGA CATGATTTAA GTGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319796474	CHEV_1_75474493	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263562084					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75454562 () rs orientation: forward

Symbol	Name	Function Class
Chpf	chondroitin polymerizing factor	Intron
Rr413448	regulatory region 413448	558 bp distal
Rr413449	regulatory region 413449	324 bp distal
Rr413450	regulatory region 413450	112 bp proximal
Rr413451	regulatory region 413451	778 bp proximal
Rr413452	regulatory region 413452	1343 bp proximal
Rr413453	regulatory region 413453	1773 bp proximal
Tmem198	transmembrane protein 198	1614 bp upstream
Tssr7538	transcription start site region 7538	1588 bp upstream
Tssr7539	transcription start site region 7539	1611 bp upstream
Tssr12402	transcription start site region 12402	1185 bp downstream
Tssr12403	transcription start site region 12403	1207 bp downstream
Tssr12404	transcription start site region 12404	1230 bp downstream
Tssr12405	transcription start site region 12405	1243 bp downstream
Tssr12406	transcription start site region 12406	1366 bp downstream
Tssr12407	transcription start site region 12407	1471 bp downstream