rs262992124 SNP Detail

Summary

• ID
  rs262992124
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:60215972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGAAGAT CATAGGCCAT
  AGAGACTACA CACACGGCTA CATTCACTGC CAGGGGCAGG TTGGGAGGTA GCCTGGGTTT
  TAAGAACTGC TTCAAGCTGC TCTACTCACC CCAGGCCAGT CCTCACCATC CTTTTGAGGG
  CCGTGATTTC TGGATCCCAT AGCTGACAGC CTTTTGGTAT GCACAGTGCT CATGGTCCTT
  G
  GGGACCCTTT CCATCTTACA GAAGAAAGCC ACTGTGCCCA ACCTCAAATC AGGCTGCCTT
  GCCTGGTTTC AGTCCCCCCA AGACTCTCCC CCCAAGCATC AGGCTGATGT CAGAAGCTGG
  GGGTGGTGGT AGGGGTGTCA ATTCCTCCAT GGCTGGCTGT GTGACTTTAC ACATAGTTAC
  TCGACCTCTC TGGTTTTCCA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325234	CHEV_10_59842941	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262992124					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60215972 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdh23	cadherin related 23 (otocadherin)			Intron
				Noncoding-Transcript-Variant
Gm56993	predicted gene, 56993			1813 bp upstream
Rr368996	regulatory region 368996			1016 bp upstream
Rr432129	regulatory region 432129			within coordinates
Rr432130	regulatory region 432130			823 bp proximal
Tssr93630	transcription start site region 93630			394 bp upstream
Tssr93631	transcription start site region 93631			453 bp upstream
Tssr97724	transcription start site region 97724			29 bp downstream