Gm56993 Gene Detail

Summary

• Symbol
  Gm56993
• Name
  predicted gene, 56993

• Feature Type
  lncRNA gene
• IDs
  MGI:7337899
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:60217785-60227812 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  362 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337899	lncRNA gene	Chr10:60217785-60227812 (+)
129S1/SvImJ	ENSMUSG00200029773	lncRNA gene	Chr10:56891589-56892844 (+)
A/J	ENSMUSG00195028303	lncRNA gene	Chr10:57204044-57205299 (+)
AKR/J	ENSMUSG00220042721	lncRNA gene	Chr10:56896193-56897448 (+)
BALB/cJ	ENSMUSG00180028953	lncRNA gene	Chr10:57246334-57247589 (+)
C3H/HeJ	ENSMUSG00175026831	lncRNA gene	Chr10:57098836-57100091 (+)
C57BL/6NJ	ENSMUSG00215031161	lncRNA gene	Chr10:56844451-56845706 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030276	lncRNA gene	Chr10:56892127-56893378 (+)
CBA/J	ENSMUSG00210037770	lncRNA gene	Chr10:56977159-56978414 (+)
DBA/2J	ENSMUSG00185043295	lncRNA gene	Chr10:57323899-57325154 (+)
FVB/NJ	ENSMUSG00205037161	lncRNA gene	Chr10:56996328-56997583 (+)
JF1/MsJ	ENSUMUG00000023605	lncRNA gene	Chr10:58563965-58565218 (+)
LP/J	ENSMUSG00230023425	lncRNA gene	Chr10:59127101-59128356 (+)
NOD/ShiLtJ	ENSMUSG00190039824	lncRNA gene	Chr10:57309739-57310994 (+)
NZO/HlLtJ	ENSMUSG00225045437	lncRNA gene	Chr10:63408046-63409301 (+)
PWK/PhJ	ENSLUMG00010024438	lncRNA gene	Chr10:56916964-56918217 (+)
SPRET/EiJ	ENSMSPG00010027902	lncRNA gene	Chr10:58503855-58505109 (+)
WSB/EiJ	ENSIUOG00005042088	lncRNA gene	Chr10:56876181-56877432 (+)

Homology

• Gene Tree
  Gm56993
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120804 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120804	Ensembl Gene Model | MGI Sequence Detail	10028	C57BL/6J
transcript	ENSMUST00000245900	Ensembl | MGI Sequence Detail	686	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56993:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93630	Chr10:60216366-60216375 (+)	-1,414 bp
Tssr93631	Chr10:60216425-60216437 (+)	-1,354 bp
Tssr93632	Chr10:60226562-60226579 (+)	8,786 bp