rs261978705 SNP Detail

Summary

• ID
  rs261978705
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135583470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGCGGTG CGCGCGTCAG
  GCCGGCGGCG CGCGCACGCC CAGAGATCTC GCGGGAAAAA GCCGTTGTCC CCCTCCGCCG
  GTGCTGCGGG GCGGGAGGTG GGAGGGGGCC TGGAGGCGGG AGCCAAGTCT CGCGAGAAGA
  GGCAGTTGCC GTAGCGGAGC CCTCTGGGTC TGTGCGAGTG TGGTGTGAGT GGATGTGAGC
  Y
  GCCGCCGGAG CTGCGGACGG TTTGCCCGAG CCCGTTAGCG CCGCCGGCCC AGAGTCCCGC
  CGCCACCATG TCCCGATACC TGCGCCCCCC TAACACGTCT CTGTTCGTCA GGAACGTGGC
  GGACGACACC AGGTGAGCGC ACCGGAGCAG CTACTGCGCG GGGGAGGGAG GCCGCGGGCG
  CCCGGCGAGC GGCGGCCGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363377216	MGP_WTSI_4_135412074	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	T	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	T	C	C	C	C	T	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261978705					SNP	T	T	C	T	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	T	C	C	C	C	T	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363377216	MGP_WTSI_4_135412074	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135583470 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15082	CpG island 15082			within coordinates
Gm13000	predicted gene 13000			1986 bp downstream
Gm57106	predicted gene, 57106			236 bp upstream
Gm69173	predicted gene, 69173			within coordinates
Rr367748	regulatory region 367748			399 bp downstream
Rr398596	regulatory region 398596			33 bp downstream
Rr602159	regulatory region 602159			1916 bp distal
Rr602160	regulatory region 602160			983 bp distal
Rr602161	regulatory region 602161			402 bp distal
Rr602162	regulatory region 602162			247 bp distal
Rr602163	regulatory region 602163			within coordinates
Srsf10	serine and arginine-rich splicing factor 10			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr39638	transcription start site region 39638			415 bp downstream
Tssr39639	transcription start site region 39639			35 bp downstream
Tssr39640	transcription start site region 39640			within coordinates
Tssr39641	transcription start site region 39641			83 bp upstream
Tssr39642	transcription start site region 39642			477 bp upstream
Tssr39643	transcription start site region 39643			1727 bp upstream
Tssr43999	transcription start site region 43999			262 bp upstream