rs260827161 SNP Detail

Summary

• ID
  rs260827161
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156286291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTACTCTA ACAATTGAGT
  TATATACTTA GTACTCAGTT TTGGTTTTTT TTTTGTTTGT TTGTTTTTGT TTTTTTGGTT
  TGTTTTTGTT TTTGTTTTTT TTTTTTTGTT TTTTTTTTGT TTGTTTGTTT TTTGTTTTTT
  GAGACAGGGT TTCTCTGTAT AGCCCTGGTT GTCCTTCTGG CTGTAACTCA CACTGTAGAC
  Y
  AGGCTGGCCT CAAACTCAGA AATCTGCCTG CCTCTGCCTC CCAAGAGCTG GAATTAAAGG
  TATGTGCCAC CACTGCCTGG CTTAGATTTT TTTTTTTAAG GTTTAGTTTT AATTATGTGG
  ATACAGTGTA TTTGGGGGGG GGGGATTGTG TATATGTGAG TGCAGGAAAT TAGAAATTTA
  GAAGAAGGAA CTGAATATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363815503	MGP_WTSI_4_155575943	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260827161					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363815503	MGP_WTSI_4_155575943	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156286291 () rs orientation: forward

Symbol	Name	Function Class
AW011738	expressed sequence AW011738	1450 bp upstream
Isg15	ISG15 ubiquitin-like modifier	1038 bp upstream
Rr398932	regulatory region 398932	1165 bp upstream
Rr606695	regulatory region 606695	1049 bp distal
Rr606696	regulatory region 606696	764 bp distal
Rr606697	regulatory region 606697	855 bp proximal
Rr606698	regulatory region 606698	875 bp proximal
Rr606699	regulatory region 606699	1481 bp proximal
Rr606700	regulatory region 606700	1949 bp proximal
Tssr40795	transcription start site region 40795	1458 bp upstream
Tssr45018	transcription start site region 45018	1797 bp upstream
Tssr45019	transcription start site region 45019	1029 bp upstream
Tssr45020	transcription start site region 45020	1001 bp upstream
Tssr45021	transcription start site region 45021	988 bp upstream