rs260543182 SNP Detail

Summary

• ID
  rs260543182
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:23249570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTGTCTGT GCGCGCAGAC
  GAACAAAGTG TGGTGGTCAC GGACCATTTC TGCCCCCCCC CCCCGAGCGT TTGGAGACCC
  TAAGCGTCCC CTACCCCCCC CCACCCTCCC CCGCGCGCCC AGCGCCCTCC TGGTGTGACG
  CCTGGGGCCC AAATTCGCTA GCTGGGCGAG CTTTCCATGA AAAGGCCGGA CGCTGAGGCT
  S
  CCATTGCGCG GGTCCCCGCG GCTCCCGCCC GAGTAGCGGC GCGCGCCTTC CCCGGAGAGG
  TCAACCGGGA GCCTTCGGTC GCCGAGAGCA GAACCCCAGG CACGCTCCTG GGGCTGCGGA
  CCGTAGACAA ACCCCCGCCG TTCTCAAGCC AGTTCCCGGA GGAAGCTGAG CGATGAGCCC
  TGAACCGCCT CCTGGAGGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367672428	MGP_WTSI_6_23199571	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260543182					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367672428	MGP_WTSI_6_23199571	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23249570 () rs orientation: forward

Symbol	Name	Function Class
C130093G08Rik	RIKEN cDNA C130093G08 gene	1562 bp upstream
Fezf1	Fez family zinc finger 1	Intron
Gm56925	predicted gene, 56925	within coordinates
Rr627164	regulatory region 627164	1023 bp distal
Rr627165	regulatory region 627165	within coordinates
Rr627166	regulatory region 627166	101 bp proximal
Rr627167	regulatory region 627167	182 bp proximal
Rr627168	regulatory region 627168	1715 bp proximal
Tssr55159	transcription start site region 55159	1023 bp downstream
Tssr55160	transcription start site region 55160	943 bp downstream
Tssr55161	transcription start site region 55161	793 bp downstream
Tssr55162	transcription start site region 55162	734 bp downstream
Tssr55163	transcription start site region 55163	1587 bp upstream
Tssr59962	transcription start site region 59962	1181 bp upstream